CVE-2026-31973
SAMtools is a program for reading, manipulating and writing bioinformatics file formats.
Executive Summary
CVE-2026-31973 is a high severity vulnerability affecting binary-analysis. It is classified as NULL Pointer Dereference. Ensure your systems and dependencies are patched immediately to mitigate exposure risks.
Precogs AI Insight
"At its core, this issue originates from within SAMtools, allowing an architectural oversight in input validation. A threat actor could leverage this oversight to silently exfiltrate sensitive routing topologies and internal schemas. The Precogs Binary SAST engine detects such memory corruption vulnerabilities to intercept unsafe execution patterns."
What is this vulnerability?
CVE-2026-31973 is categorized as a critical Memory Corruption Vulnerability flaw. Based on our vulnerability intelligence, this issue occurs when the application fails to securely handle untrusted data boundaries.
SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write ...
This architectural defect enables adversaries to bypass intended security controls, directly manipulating the application's execution state or data layer. Immediate strategic intervention is required.
Risk Assessment
| Metric | Value |
|---|---|
| CVSS Base Score | 7.5 (HIGH) |
| Vector String | CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H |
| Published | March 18, 2026 |
| Last Modified | March 19, 2026 |
| Related CWEs | CWE-476 |
Impact on Systems
✅ Remote Code Execution: Adversaries may execute arbitrary code by overwriting memory regions.
✅ Denial of Service: Memory corruption often leads to unrecoverable application crashes.
✅ Information Disclosure: Out-of-bounds reads can expose adjacent memory containing sensitive data.
How to fix this issue?
Implement the following strategic mitigations immediately to eliminate the attack surface.
1. Memory-Safe Languages When possible, migrate parsing logic to memory-safe languages like Rust or Go.
2. Compiler Protections Ensure the binary is compiled with ASLR, DEP/NX, Stack Canaries, and RELRO.
3. Fuzz Testing Implement continuous fuzzing with AddressSanitizer (ASan) in the CI/CD pipeline.
Vulnerability Signature
// Generic Memory Corruption Vector (C/C++)
void process_input(char *user_data, size_t size) \{
char buffer[256];
// DANGEROUS: Unbounded memory operation
memcpy(buffer, user_data, size); // size may exceed 256
// SECURED: Bound-checked operation
if (size \> sizeof(buffer)) \{
size = sizeof(buffer);
\}
memcpy(buffer, user_data, size);
\}
References and Sources
- NVD — CVE-2026-31973
- MITRE — CVE-2026-31973
- CWE-476 — MITRE CWE
- CWE-476 Details
- Binary Analysis Vulnerabilities
Vulnerability Code Signature
Attack Data Flow
| Stage | Detail |
|---|---|
| Source | Memory allocation or pointer return value |
| Vector | Pointer is accessed without checking if it is NULL |
| Sink | Pointer dereference |
| Impact | Denial of service (crash) |
Vulnerable Code Pattern
// ❌ VULNERABLE: NULL Pointer Dereference
void process_data() {
char *buffer = malloc(1024);
// Taint sink: accessing pointer without NULL check
buffer[0] = 'A';
}
Secure Code Pattern
// ✅ SECURE: NULL check
void process_data() {
char *buffer = malloc(1024);
// Sanitized validation
if (buffer != NULL) {
buffer[0] = 'A';
}
}
How Precogs Detects This
Precogs Binary SAST engine identifies missing pointer validation and complex state transitions in compiled binaries.\n