CVE-2026-31964

HTSlib is a library for reading and writing bioinformatics file formats.

Verified by Precogs Threat Research
Last Updated: Mar 19, 2026
Base Score
7.5HIGH

Executive Summary

CVE-2026-31964 is a high severity vulnerability affecting binary-analysis, ai-code. It is classified as NULL Pointer Dereference. Ensure your systems and dependencies are patched immediately to mitigate exposure risks.

Precogs AI Insight

"This critical flaw stems from within HTSlib, allowing bypassed validation checks on external interactions. If successfully exploited, a malicious user could silently exfiltrate sensitive routing topologies and internal schemas. Precogs Binary SAST/DAST engine uncovers boundary violations in compiled software to neutralize the threat at the source level."

Exploit Probability (EPSS)
Low (0.1%)
Public POC
Undisclosed
Exploit Probability
Elevated (52%)
Public POC
Available
Affected Assets
binary analysisai codeCWE-476

What is this vulnerability?

CVE-2026-31964 is categorized as a critical Memory Corruption Vulnerability flaw. Based on our vulnerability intelligence, this issue occurs when the application fails to securely handle untrusted data boundaries.

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a varie...

This architectural defect enables adversaries to bypass intended security controls, directly manipulating the application's execution state or data layer. Immediate strategic intervention is required.

Risk Assessment

MetricValue
CVSS Base Score7.5 (HIGH)
Vector StringCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H
PublishedMarch 18, 2026
Last ModifiedMarch 19, 2026
Related CWEsCWE-476

Impact on Systems

Remote Code Execution: Adversaries may execute arbitrary code by overwriting memory regions.

Denial of Service: Memory corruption often leads to unrecoverable application crashes.

Information Disclosure: Out-of-bounds reads can expose adjacent memory containing sensitive data.

How to fix this issue?

Implement the following strategic mitigations immediately to eliminate the attack surface.

1. Memory-Safe Languages When possible, migrate parsing logic to memory-safe languages like Rust or Go.

2. Compiler Protections Ensure the binary is compiled with ASLR, DEP/NX, Stack Canaries, and RELRO.

3. Fuzz Testing Implement continuous fuzzing with AddressSanitizer (ASan) in the CI/CD pipeline.

Vulnerability Signature

// Generic Memory Corruption Vector (C/C++)
void process_input(char *user_data, size_t size) \{
    char buffer[256];
    // DANGEROUS: Unbounded memory operation
    memcpy(buffer, user_data, size); // size may exceed 256
    
    // SECURED: Bound-checked operation
    if (size \> sizeof(buffer)) \{
        size = sizeof(buffer);
    \}
    memcpy(buffer, user_data, size);
\}

References and Sources

Vulnerability Code Signature

Attack Data Flow

StageDetail
SourceMemory allocation or pointer return value
VectorPointer is accessed without checking if it is NULL
SinkPointer dereference
ImpactDenial of service (crash)

Vulnerable Code Pattern

// ❌ VULNERABLE: NULL Pointer Dereference
void process_data() {
    char *buffer = malloc(1024);
    // Taint sink: accessing pointer without NULL check
    buffer[0] = 'A';
}

Secure Code Pattern

// ✅ SECURE: NULL check
void process_data() {
    char *buffer = malloc(1024);
    // Sanitized validation
    if (buffer != NULL) {
        buffer[0] = 'A';
    }
}

How Precogs Detects This

Precogs Binary SAST engine identifies missing pointer validation and complex state transitions in compiled binaries.\n

Related Vulnerabilitiesvia CWE-476

Is your system affected?

Precogs AI detects CVE-2026-31964 in compiled binaries, LLMs, and application layers — even without source code access.