CVE-2026-31971

HTSlib is a library for reading and writing bioinformatics file formats.

Verified by Precogs Threat Research
Last Updated: Mar 19, 2026
Base Score
8.1HIGH

Executive Summary

CVE-2026-31971 is a high severity vulnerability affecting binary-analysis, ai-code. It is classified as Stack-based Buffer Overflow. Ensure your systems and dependencies are patched immediately to mitigate exposure risks.

Precogs AI Insight

"Architecturally, this flaw occurs due to within HTSlib, allowing the improper handling of untrusted input. In a real-world scenario, an attacker could exploit this by execute arbitrary code on the target system, potentially leading to full system compromise. Precogs Binary SAST detects lifecycle mismanagement and dangling pointers to safeguard the application against payload injection."

Exploit Probability (EPSS)
Low (0.1%)
Public POC
Undisclosed
Exploit Probability
Elevated (52%)
Public POC
Available
Affected Assets
binary analysisai codeCWE-121

What is this vulnerability?

CVE-2026-31971 is categorized as a critical Memory Corruption Vulnerability flaw. Based on our vulnerability intelligence, this issue occurs when the application fails to securely handle untrusted data boundaries.

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a varie...

This architectural defect enables adversaries to bypass intended security controls, directly manipulating the application's execution state or data layer. Immediate strategic intervention is required.

Risk Assessment

MetricValue
CVSS Base Score8.1 (HIGH)
Vector StringCVSS:3.1/AV:N/AC:L/PR:N/UI:R/S:U/C:N/I:H/A:H
PublishedMarch 18, 2026
Last ModifiedMarch 19, 2026
Related CWEsCWE-121, CWE-122, CWE-787, CWE-1284

Impact on Systems

Remote Code Execution: Adversaries may execute arbitrary code by overwriting memory regions.

Denial of Service: Memory corruption often leads to unrecoverable application crashes.

Information Disclosure: Out-of-bounds reads can expose adjacent memory containing sensitive data.

How to fix this issue?

Implement the following strategic mitigations immediately to eliminate the attack surface.

1. Memory-Safe Languages When possible, migrate parsing logic to memory-safe languages like Rust or Go.

2. Compiler Protections Ensure the binary is compiled with ASLR, DEP/NX, Stack Canaries, and RELRO.

3. Fuzz Testing Implement continuous fuzzing with AddressSanitizer (ASan) in the CI/CD pipeline.

Vulnerability Signature

// Generic Memory Corruption Vector (C/C++)
void process_input(char *user_data, size_t size) \{
    char buffer[256];
    // DANGEROUS: Unbounded memory operation
    memcpy(buffer, user_data, size); // size may exceed 256
    
    // SECURED: Bound-checked operation
    if (size \> sizeof(buffer)) \{
        size = sizeof(buffer);
    \}
    memcpy(buffer, user_data, size);
\}

References and Sources

Vulnerability Code Signature

Attack Data Flow

StageDetail
SourceNetwork packet or file input
VectorData exceeds the allocated buffer bounds during a copy operation on the stack
Sinkstrcpy(), memcpy(), or pointer arithmetic
ImpactMemory corruption, Remote Code Execution (RCE)

Vulnerable Code Pattern

// ❌ VULNERABLE: Stack-based Buffer Overflow
void process_data(char *input) {
    char buffer[64];
    // Taint sink: copies without bounds checking
    strcpy(buffer, input);
}

Secure Code Pattern

// ✅ SECURE: Bounded copy
void process_data(char *input) {
    char buffer[64];
    // Sanitized boundary check
    strncpy(buffer, input, sizeof(buffer) - 1);
    buffer[sizeof(buffer) - 1] = '\0';
}

How Precogs Detects This

Precogs Binary SAST engine explicitly uncovers memory boundary violations and unsafe memory management functions in compiled binaries.\n

Related Vulnerabilitiesvia CWE-121

Is your system affected?

Precogs AI detects CVE-2026-31971 in compiled binaries, LLMs, and application layers — even without source code access.